miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|58327497|gb|AJ763832.1|AJ763832 GGTTTGGTACGACCGGCAACAAGACTACGCAGATGAAGGAGATTGCAGCTTTTCTTGGTCATGTCGGCAGTCAAACTTCT
TGTGGTTATGGATTTGCAACCGGAGGACCCACAGCATGGGGATTATGCTACAATAAAGAACTAAGTCCTAGCAAAGACTA
CTGTGATGAATACTACAAGTACAATTACCCTTGTGCCCCTGGAGCGGAATACTATGGACGTGGTGCTTTGCCCATCTATT
GGCAATACAACTATGGACAAATCGGCGACGCCCTAAAAGTCGACCTCTTGAACCACCCAGAATACATCGAACAAAACGCC
ACCTTGGCGTTCCAAGCCGCAATCCACAGATGGTTGACCCCAATGAAAAAAGGTCAACCCTCGGCCCATGAGGCCATTGT
GGGCACATGGAAACCCACCAAGAATGACACATTGGCCAACCGGTTTCCAGGGTTCGGCACCACCATGAATATCCTTTATG
GTGAACGCGTGTGCGGTCAAGGTGACGTGGATGACATGAACACAATTGTCACTCATTATTTATATTATCTTGACTTGATG
GGTGTGGGCCGTGAGGAAGCTGGGCCCCACG




Most similar to sp|Q9MA41|CTL1_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q84M85|LOGL5_ORYSJ Probable cytokinin riboside 5'-monophosphate
           phosphoribohydrolase LOGL5 OS=Oryza sativa subsp.
           japonica GN=LOGL5 PE=2 SV=1
          Length = 246

 Score = 96.7 bits (239), Expect(2) = 9e-26
 Identities = 49/69 (71%), Positives = 49/69 (71%)
 Frame = +3

Query: 66  MMMENSREQQPESSPANNNSXXXXXXXTGSRFRRVCVFCGSSPGKKASYXXXXXXXXXXX 245
           MMMENSREQQPESSPANNNS       T SRFRRVCVFCGSSPGKKASY           
Sbjct: 1   MMMENSREQQPESSPANNNSKKKKKKKTASRFRRVCVFCGSSPGKKASYQVAAVQLGQQL 60

Query: 246 XERGIDLVY 272
            ERGIDLVY
Sbjct: 61  VERGIDLVY 69



 Score = 39.7 bits (91), Expect(2) = 9e-26
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = +2

Query: 347 VVPNGVLPRELIGETLGE 400
           VVPNGVLPRELIGETLGE
Sbjct: 94  VVPNGVLPRELIGETLGE 111


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9MA41|CTL1_ARATH Chitinase-like protein 1 OS=Arabidopsis
           thaliana GN=CTL1 PE=1 SV=1
          Length = 321

 Score =  329 bits (843), Expect = 9e-90
 Identities = 143/196 (72%), Positives = 167/196 (85%)
 Frame = +3

Query: 3   FGTTGNKTTQMKEIAAFLGHVGSQTSCGYGFATGGPTAWGLCYNKELSPSKDYCDEYYKY 182
           FGTTG K    KE+AAFLGHV S+TSCGYG ATGGP AWGLCYN+E+SP + YCDE +K+
Sbjct: 104 FGTTGGKLMGQKEMAAFLGHVASKTSCGYGVATGGPLAWGLCYNREMSPMQSYCDESWKF 163

Query: 183 NYPCAPGAEYYGRGALPIYWQYNYGQIGDALKVDLLNHPEYIEQNATLAFQAAIHRWLTP 362
            YPC+PGAEYYGRGALPIYW +NYG  G+ALK DLLNHPEYIEQNATLAFQAAI RW+TP
Sbjct: 164 KYPCSPGAEYYGRGALPIYWNFNYGAAGEALKADLLNHPEYIEQNATLAFQAAIWRWMTP 223

Query: 363 MKKGQPSAHEAIVGTWKPTKNDTLANRFPGFGTTMNILYGERVCGQGDVDDMNTIVTHYL 542
           +K+ QPSAH+  VG WKPTKNDTL+ R P FG+TMN+LYGE  CGQG +D MN I++HYL
Sbjct: 224 IKRAQPSAHDIFVGNWKPTKNDTLSKRGPTFGSTMNVLYGEYTCGQGSIDPMNNIISHYL 283

Query: 543 YYLDLMGVGREEAGPH 590
           Y+LDLMG+GRE+AGP+
Sbjct: 284 YFLDLMGIGREDAGPN 299